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    Y60A3A.19 Protein YIPF [ Caenorhabditis elegans ]

    Gene ID: 180305, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y60A3A.19
    Official Full Name
    Protein YIPF
    Primary source
    WormBase:WBGene00013365
    Locus tag
    CELE_Y60A3A.19
    See related
    AllianceGenome:WB:WBGene00013365
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and vesicle fusion with Golgi apparatus. Predicted to be located in Golgi membrane. Predicted to be active in trans-Golgi network. Orthologous to human YIPF4 (Yip1 domain family member 4). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y60A3A.19 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (19916555..19920001)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Protein kinase domain-containing protein Neighboring gene FDX-ACB domain-containing protein;phenylalanine--tRNA ligase Neighboring gene ncRNA Neighboring gene Serine/threonine-protein kinase chk-2 Neighboring gene non-specific serine/threonine protein kinase Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in vesicle fusion with Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Protein YIPF
    NP_001123056.1
    • Confirmed by transcript evidence
    NP_001370244.1
    • Confirmed by transcript evidence
    NP_507855.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      19916555..19920001
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001383502.2 → NP_001370244.1  Protein YIPF [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B1GRN9

    2. NM_075454.8 → NP_507855.2  Protein YIPF [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_507855.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U1Y7, Q9U1Y8
      Conserved Domains (1) summary
      pfam04893
      Location:123 → 198
      Yip1; Yip1 domain

    3. NM_001129584.2 → NP_001123056.1  Protein YIPF [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001123056.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A5PEX8
      Conserved Domains (1) summary
      cl21557
      Location:73 → 249
      Yip1; Yip1 domain
    Nucleotide Protein
    Heading Accession and Version

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