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    Y57A10A.31 RING-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 174872, updated on 9-Dec-2024

    Summary

    Official Symbol
    Y57A10A.31
    Official Full Name
    RING-type domain-containing protein
    Primary source
    WormBase:WBGene00013270
    Locus tag
    CELE_Y57A10A.31
    See related
    AllianceGenome:WB:WBGene00013270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ubiquitin binding activity and ubiquitin-protein transferase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein linear polyubiquitination. Predicted to be part of LUBAC complex. Human ortholog(s) of this gene implicated in Gordon Holmes syndrome. Orthologous to human RNF216 (ring finger protein 216). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See Y57A10A.31 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    9
    Sequence:
    Chromosome: II; NC_003280.10 (12289385..12300573)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Succinate dehydrogenase assembly factor 2, mitochondrial Neighboring gene Eukaryotic translation initiation factor 4E-5 Neighboring gene Dof-type domain-containing protein Neighboring gene G_PROTEIN_RECEP_F1_2 domain-containing protein Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables ubiquitin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ubiquitin-protein transferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein linear polyubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    part_of LUBAC complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    RING-type domain-containing protein
    NP_496609.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      12289385..12300573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064208.3NP_496609.2  RING-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496609.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9NA71
      Conserved Domains (3) summary
      smart00647
      Location:882946
      IBR; In Between Ring fingers
      cl17238
      Location:803832
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl19760
      Location:9701011
      IBR; IBR domain, a half RING-finger domain