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    F20G2.2 DeHydrogenases, Short chain [ Caenorhabditis elegans ]

    Gene ID: 184743, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F20G2.2
    Official Full Name
    DeHydrogenases, Short chain
    Primary source
    WormBase:WBGene00008986
    Locus tag
    CELE_F20G2.2
    See related
    AllianceGenome:WB:WBGene00008986
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable oxidoreductase activity. Predicted to be active in cytoplasm. Orthologous to human CBR1 (carbonyl reductase 1) and CBR3 (carbonyl reductase 3). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F20G2.2 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (13755011..13756409, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene DeHydrogenases, Short chain Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Transmembrane protein Neighboring gene CRAL-TRIO domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AdipoR2 recruits protein interactors to promote fatty acid elongation and membrane fluidity. Ruiz M, et al. J Biol Chem, 2023 Jun. PMID 37164154, Free PMC Article
    2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables oxidoreductase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DeHydrogenases, Short chain
    NP_506407.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      13755011..13756409 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_074006.7 → NP_506407.1  DeHydrogenases, Short chain [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506407.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q93545
      Conserved Domains (2) summary
      cd05325
      Location:7 → 248
      carb_red_sniffer_like_SDR_c; carbonyl reductase sniffer-like, classical (c) SDRs
      pfam00106
      Location:7 → 208
      adh_short; short chain dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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