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    Y102A11A.2 Chromatin-remodeling ATPase INO80 [ Caenorhabditis elegans ]

    Gene ID: 180515, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y102A11A.2
    Official Full Name
    Chromatin-remodeling ATPase INO80
    Primary source
    WormBase:WBGene00022412
    Locus tag
    CELE_Y102A11A.2
    See related
    AllianceGenome:WB:WBGene00022412
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in several structures, including intestine; nervous system; rectal gland cell; tail; and vulval muscle. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y102A11A.2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    8
    Sequence:
    Chromosome: X; NC_003284.9 (2026642..2031010)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene HALZ domain-containing protein;Lebercilin domain-containing protein Neighboring gene Protein unc-13 homolog A Neighboring gene MliC domain-containing protein Neighboring gene Endoplasmic reticulum-Golgi intermediate compartment protein 1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    Chromatin-remodeling ATPase INO80
    NP_001024950.1
    • Confirmed by transcript evidence
    NP_001024951.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      2026642..2031010
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001029779.4 → NP_001024950.1  Chromatin-remodeling ATPase INO80 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001024950.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95XK1
      Conserved Domains (3) summary
      COG1390
      Location:478 → 570
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      cl21478
      Location:467 → 540
      ATP-synt_B; ATP synthase B/B' CF(0)
      cl23750
      Location:482 → 602
      vATP-synt_E; ATP synthase (E/31 kDa) subunit

    2. NM_001029780.6 → NP_001024951.1  Chromatin-remodeling ATPase INO80 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001024951.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L062
      Conserved Domains (3) summary
      COG1390
      Location:478 → 570
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      cl21478
      Location:467 → 540
      ATP-synt_B; ATP synthase B/B' CF(0)
      cl23750
      Location:482 → 602
      vATP-synt_E; ATP synthase (E/31 kDa) subunit
    Nucleotide Protein
    Heading Accession and Version

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