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    F53H2.1 Protein containing ALS2cr12 (ALS2CR12) signature;SH2 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 186191, updated on 18-Sep-2024

    Summary

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    Official Symbol
    F53H2.1
    Official Full Name
    Protein containing ALS2cr12 (ALS2CR12) signature;SH2 domain-containing protein
    Primary source
    WormBase:WBGene00010004
    Locus tag
    CELE_F53H2.1
    See related
    AllianceGenome:WB:WBGene00010004
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See F53H2.1 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    22
    Sequence:
    Chromosome: V; NC_003283.11 (20387715..20393367)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Phosphatidate cytidylyltransferase Neighboring gene ncRNA Neighboring gene Cilia- and flagella-associated protein 251-like Neighboring gene CaeNaCin (Caenorhabditis bacteriocin) Neighboring gene ncRNA Neighboring gene WW domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Protein containing ALS2cr12 (ALS2CR12) signature;SH2 domain-containing protein
    NP_001300117.1
    • Partially confirmed by transcript evidence
    NP_001300118.1
    • Partially confirmed by transcript evidence
    NP_507929.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      20387715..20393367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_075528.2 → NP_507929.2  SH2 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_507929.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U3E6
      Conserved Domains (1) summary
      pfam05218
      Location:734 → 920
      DUF713; Protein of unknown function (DUF713)

    2. NM_001313188.1 → NP_001300117.1  Protein containing ALS2cr12 (ALS2CR12) signature [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AS53
      Conserved Domains (1) summary
      pfam05218
      Location:556 → 742
      DUF713; Protein of unknown function (DUF713)

    3. NM_001313189.1 → NP_001300118.1  Protein containing ALS2cr12 (ALS2CR12) signature [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AVM5
      Conserved Domains (1) summary
      pfam05218
      Location:149 → 335
      DUF713; Protein of unknown function (DUF713)
    Nucleotide Protein
    Heading Accession and Version

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