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    snpc-1.1 snRNA-activating protein complex subunit 1 [ Caenorhabditis elegans ]

    Gene ID: 174255, updated on 9-Dec-2024

    Summary

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    Official Symbol
    snpc-1.1
    Official Full Name
    snRNA-activating protein complex subunit 1
    Primary source
    WormBase:WBGene00015513
    Locus tag
    CELE_C06A8.2
    See related
    AllianceGenome:WB:WBGene00015513
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Orthologous to human SNAPC1 (small nuclear RNA activating complex polypeptide 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See snpc-1.1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    9
    Sequence:
    Chromosome: II; NC_003280.10 (7779297..7781301, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene U2A'/phosphoprotein 32 family A C-terminal domain-containing protein Neighboring gene putative methylenetetrahydrofolate reductase (NADPH) Neighboring gene Spindly-like protein spdl-1 Neighboring gene Skp1-related protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The SNAPc complex mediates starvation-induced trans-splicing in Caenorhabditis elegans. Hou X, et al. J Genet Genomics, 2022 Oct. PMID 35283340
    2. The USTC co-opts an ancient machinery to drive piRNA transcription in C. elegans. Weng C, et al. Genes Dev, 2019 Jan 1. PMID 30567997, Free PMC Article
    3. Identification of cross-linked peptides from complex samples. Yang B, et al. Nat Methods, 2012 Sep. PMID 22772728
    4. A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. Koorman T, et al. Nat Cell Biol, 2016 Mar. PMID 26780296, Free PMC Article
    5. Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity. Ceron J, et al. BMC Dev Biol, 2007 Apr 6. PMID 17417969, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in snRNA transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in snRNA transcription by RNA polymerase III IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of snRNA-activating protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    snRNA-activating protein complex subunit 1
    NP_495636.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      7779297..7781301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063235.6 → NP_495636.2  snRNA-activating protein complex subunit 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495636.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q17694
      Conserved Domains (1) summary
      pfam09808
      Location:15 → 209
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43
    Nucleotide Protein
    Heading Accession and Version

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