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    nyn-3 RNase NYN domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 183011, updated on 9-Dec-2024

    Summary

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    Official Symbol
    nyn-3
    Official Full Name
    RNase NYN domain-containing protein
    Primary source
    WormBase:WBGene00016212
    Locus tag
    CELE_C29F5.3
    See related
    AllianceGenome:WB:WBGene00016212
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable RNA endonuclease activity and mRNA binding activity. Predicted to be active in cytoplasmic ribonucleoprotein granule and nucleus. Is expressed in gonad and in male. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See nyn-3 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    9
    Sequence:
    Chromosome: II; NC_003280.10 (6290582..6292627, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene DUF4238 domain-containing protein Neighboring gene CN hydrolase domain-containing protein Neighboring gene MiRP K channel accessory Subunit Neighboring gene ncRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tissue-specific modification of gld-2 mRNA in C. elegans: likely C-to-U editing. Wang L, et al. RNA, 2004 Sep. PMID 15317977, Free PMC Article
    2. Biogenesis of C. elegans spermatogenesis small RNAs is initiated by a zc3h12a-like ribonuclease. Tsai HY, et al. Sci Adv, 2022 Aug 12. PMID 35947655, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA endonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasmic ribonucleoprotein granule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    RNase NYN domain-containing protein
    NP_495262.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      6290582..6292627 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062861.6 → NP_495262.2  RNase NYN domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495262.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q18305
      Conserved Domains (1) summary
      cl28905
      Location:25 → 157
      PIN_SF; PIN (PilT N terminus) domain: Superfamily
    Nucleotide Protein
    Heading Accession and Version

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