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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_023544.2 RefSeqGene
- Range
-
4553..937163
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001288715.1 → NP_001275644.1 catenin delta-2 isoform 2
See identical proteins and their annotated locations for NP_001275644.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and coding region, uses a downstream start codon, compared to variant 1. The resulting protein (isoform 2) has a shorter and distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AB013805, AC010626, AI680877, AK226124, DC332925, U52351, U52828
- Consensus CDS
-
CCDS75228.1
- UniProtKB/TrEMBL
- A0A994J5I1, E7EPC8
- Related
- ENSP00000426510.1, ENST00000511377.5
- Conserved Domains (6) summary
-
- smart00185
Location:490 → 530
- ARM; Armadillo/beta-catenin-like repeats
- pfam00514
Location:743 → 784
- Arm; Armadillo/beta-catenin-like repeat
- sd00043
Location:461 → 486
- ARM; armadillo repeat [structural motif]
- cl25496
Location:164 → 292
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- cl27106
Location:459 → 632
- PLN03200; cellulose synthase-interactive protein; Provisional
- cl28033
Location:72 → 443
- Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
-
NM_001288716.1 → NP_001275645.1 catenin delta-2 isoform 3
See identical proteins and their annotated locations for NP_001275645.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and coding region, uses a downstream start codon, and lacks two alternate exons in the 5' coding region, compared to variant 1. The resulting protein (isoform 3) has a shorter and distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AC010626, AF035302, AI680877, AK299300, DB571461, DC332925
- Consensus CDS
-
CCDS75227.1
- UniProtKB/TrEMBL
- B3KXF4, B4DJU1, B4DRK2
- Related
- ENSP00000426887.1, ENST00000503622.5
- Conserved Domains (4) summary
-
- smart00185
Location:244 → 284
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:213 → 386
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:215 → 240
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:288 → 329
- Arm; Armadillo/beta-catenin-like repeat
-
NM_001288717.2 → NP_001275646.1 catenin delta-2 isoform 4
See identical proteins and their annotated locations for NP_001275646.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an alternate internal exon and uses a downstream start codon, compared to variant 1. The resulting protein (isoform 4) is shorter and has a distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AC010626, AC127460, AI680877, AK226124, AK296232, U52351, U52828
- UniProtKB/TrEMBL
- B3KXF4, B4DJU1
- Conserved Domains (4) summary
-
- smart00185
Location:148 → 188
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:117 → 290
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:119 → 144
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:401 → 441
- Arm; Armadillo/beta-catenin-like repeat
-
NM_001332.4 → NP_001323.1 catenin delta-2 isoform 1
See identical proteins and their annotated locations for NP_001323.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest protein (isoform 1).
- Source sequence(s)
-
AB013805, AC010626, AC127460, DC341093, U52351, U96136
- Consensus CDS
-
CCDS3881.1
- UniProtKB/Swiss-Prot
- B0FTZ7, O00379, O15390, O43206, O43840, Q13589, Q9UM66, Q9UPM3, Q9UQB3
- Related
- ENSP00000307134.8, ENST00000304623.13
- Conserved Domains (5) summary
-
- smart00185
Location:581 → 621
- ARM; Armadillo/beta-catenin-like repeats
- pfam00514
Location:834 → 875
- Arm; Armadillo/beta-catenin-like repeat
- sd00043
Location:552 → 577
- ARM; armadillo repeat [structural motif]
- cl27106
Location:550 → 723
- PLN03200; cellulose synthase-interactive protein; Provisional
- cl28033
Location:163 → 534
- Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
-
NM_001364128.2 → NP_001351057.1 catenin delta-2 isoform 6
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR and coding sequence, lacks two alternate exons, and contains another alternate in-frame exon compared to variant 1. The resulting isoform (6) is shorter at the N-terminus, lacks an alternate internal segment, and contains another alternate segment compared to isoform 1.
- Source sequence(s)
-
AC003954, AC004648, AC005367, AC005610, AC010433, AC010626
- Consensus CDS
-
CCDS93685.1
- UniProtKB/TrEMBL
- A0A994J5V2, B3KXF4, B4DJU1
- Related
- ENSP00000516315.1, ENST00000706271.1
- Conserved Domains (4) summary
-
- smart00185
Location:244 → 284
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:213 → 386
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:215 → 240
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:288 → 329
- Arm; Armadillo/beta-catenin-like repeat
RNA
-
NR_109988.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks two alternate internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC010626, AC127460, AK299300, DC341093, EU328348
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
10971836..11904446 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017009074.2 → XP_016864563.1 catenin delta-2 isoform X4
- UniProtKB/TrEMBL
-
E9PHB5
- Conserved Domains (4) summary
-
- smart00185
Location:335 → 375
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:304 → 477
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:306 → 331
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:379 → 420
- Arm; Armadillo/beta-catenin-like repeat
-
XM_017009072.2 → XP_016864561.1 catenin delta-2 isoform X3
- UniProtKB/TrEMBL
-
E9PHB5
- Related
- ENSP00000421093.1, ENST00000513588.5
- Conserved Domains (4) summary
-
- smart00185
Location:335 → 375
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:304 → 477
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:306 → 331
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:379 → 420
- Arm; Armadillo/beta-catenin-like repeat
-
XM_005248251.4 → XP_005248308.1 catenin delta-2 isoform X1
See identical proteins and their annotated locations for XP_005248308.1
- Conserved Domains (4) summary
-
- cd00020
Location:544 → 666
- ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
- pfam00514
Location:834 → 875
- Arm; Armadillo/beta-catenin-like repeat
- pfam17052
Location:1054 → 1113
- CAF20; Cap associated factor
- sd00043
Location:552 → 577
- ARM; armadillo repeat [structural motif]
-
XM_011513967.3 → XP_011512269.1 catenin delta-2 isoform X2
See identical proteins and their annotated locations for XP_011512269.1
- UniProtKB/TrEMBL
-
A0A994J5I1
- Conserved Domains (4) summary
-
- cd00020
Location:453 → 575
- ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
- pfam00514
Location:743 → 784
- Arm; Armadillo/beta-catenin-like repeat
- pfam17052
Location:963 → 1022
- CAF20; Cap associated factor
- sd00043
Location:461 → 486
- ARM; armadillo repeat [structural motif]
-
XM_005248253.2 → XP_005248310.1 catenin delta-2 isoform X2
See identical proteins and their annotated locations for XP_005248310.1
- UniProtKB/TrEMBL
-
A0A994J5I1
- Conserved Domains (4) summary
-
- cd00020
Location:453 → 575
- ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
- pfam00514
Location:743 → 784
- Arm; Armadillo/beta-catenin-like repeat
- pfam17052
Location:963 → 1022
- CAF20; Cap associated factor
- sd00043
Location:461 → 486
- ARM; armadillo repeat [structural motif]
-
XM_047416777.1 → XP_047272733.1 catenin delta-2 isoform X5
- UniProtKB/TrEMBL
- B3KXF4, B4DJU1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
10909469..11841846 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054351724.1 → XP_054207699.1 catenin delta-2 isoform X4
- UniProtKB/TrEMBL
-
E9PHB5
-
XM_054351723.1 → XP_054207698.1 catenin delta-2 isoform X3
- UniProtKB/TrEMBL
-
E9PHB5
-
XM_054351719.1 → XP_054207694.1 catenin delta-2 isoform X1
-
XM_054351720.1 → XP_054207695.1 catenin delta-2 isoform X6
-
XM_054351722.1 → XP_054207697.1 catenin delta-2 isoform X2
- UniProtKB/TrEMBL
-
A0A994J5I1
-
XM_054351721.1 → XP_054207696.1 catenin delta-2 isoform X2
- UniProtKB/TrEMBL
-
A0A994J5I1
-
XM_054351725.1 → XP_054207700.1 catenin delta-2 isoform X5
- UniProtKB/TrEMBL
- B3KXF4, B4DJU1