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    R31.2 ANK_REP_REGION domain-containing protein;Ubiquitin-like domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179630, updated on 9-Dec-2024

    Summary

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    Official Symbol
    R31.2
    Official Full Name
    ANK_REP_REGION domain-containing protein;Ubiquitin-like domain-containing protein
    Primary source
    WormBase:WBGene00011270
    Locus tag
    CELE_R31.2
    See related
    AllianceGenome:WB:WBGene00011270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Located in striated muscle myosin thick filament. Orthologous to human ANKRD40 (ankyrin repeat domain 40). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See R31.2 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    9
    Sequence:
    Chromosome: V; NC_003283.11 (11917573..11924653)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Spectrin beta chain Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Intraflagellar transport protein 52 C-terminal domain-containing protein Neighboring gene Alpha-mannosidase Neighboring gene Secreted protein Neighboring gene Enolase-phosphatase E1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
    2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in striated muscle myosin thick filament HDA PubMed 

    General protein information

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    Preferred Names
    ANK_REP_REGION domain-containing protein;Ubiquitin-like domain-containing protein
    NP_001041154.2
    • Confirmed by transcript evidence
    NP_001041155.2
    • Confirmed by transcript evidence
    NP_001041156.1
    • Confirmed by transcript evidence
    NP_001122992.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      11917573..11924653
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001047689.4 → NP_001041154.2  ANK_REP_REGION domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041154.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q22015
      Conserved Domains (3) summary
      sd00045
      Location:45 → 76
      ANK; ANK repeat [structural motif]
      pfam00023
      Location:45 → 77
      Ank; Ankyrin repeat
      pfam12796
      Location:16 → 82
      Ank_2; Ankyrin repeats (3 copies)

    2. NM_001047690.5 → NP_001041155.2  Ubiquitin-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041155.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q1NZ18

    3. NM_001129520.4 → NP_001122992.1  ANK_REP_REGION domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122992.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A5Z2T8

    4. NM_001047691.6 → NP_001041156.1  ANK_REP_REGION domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041156.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q1NZ17
    Nucleotide Protein
    Heading Accession and Version

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