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    C01G10.7 HpcH/HpaI aldolase/citrate lyase domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 180018, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C01G10.7
    Official Full Name
    HpcH/HpaI aldolase/citrate lyase domain-containing protein
    Primary source
    WormBase:WBGene00007234
    Locus tag
    CELE_C01G10.7
    See related
    AllianceGenome:WB:WBGene00007234
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable magnesium ion binding activity. Predicted to be involved in oxaloacetate metabolic process. Is expressed in several structures, including head; head mesodermal cell; intestine; pharynx; and rectal gland cell. Orthologous to human CLYBL (citramalyl-CoA lyase). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C01G10.7 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (15085747..15086918)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene MitMem_reg domain-containing protein;UNC-76 Neighboring gene putative tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial Neighboring gene Methylthioribose-1-phosphate isomerase Neighboring gene Activator of Hsp90 ATPase AHSA1-like N-terminal domain-containing protein Neighboring gene FIP (Fungus-Induced Protein) Related Neighboring gene FIP (Fungus-Induced Protein) Related Neighboring gene FIP (Fungus-Induced Protein) Related Neighboring gene FIP (Fungus-Induced Protein) Related

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables magnesium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in oxaloacetate metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    HpcH/HpaI aldolase/citrate lyase domain-containing protein
    NP_506716.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      15085747..15086918
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_074315.9 → NP_506716.1  HpcH/HpaI aldolase/citrate lyase domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506716.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q93167
      Conserved Domains (2) summary
      pfam03328
      Location:26 → 259
      HpcH_HpaI; HpcH/HpaI aldolase/citrate lyase family
      cl21481
      Location:230 → 303
      malate_synt; Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their ...
    Nucleotide Protein
    Heading Accession and Version

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