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    W09D6.1 AMP-dependent synthetase/ligase domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 176537, updated on 9-Dec-2024

    Summary

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    Official Symbol
    W09D6.1
    Official Full Name
    AMP-dependent synthetase/ligase domain-containing protein
    Primary source
    WormBase:WBGene00012356
    Locus tag
    CELE_W09D6.1
    See related
    AllianceGenome:WB:WBGene00012356
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in amino acid activation for nonribosomal peptide biosynthetic process. Orthologous to human AASDH (aminoadipate-semialdehyde dehydrogenase). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See W09D6.1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    12
    Sequence:
    Chromosome: III; NC_003281.10 (11068853..11072993)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Regulator of spindle assembly protein 2 Neighboring gene ncRNA Neighboring gene tRNA-Pro Neighboring gene tRNA-Pro Neighboring gene Seven TM Receptor Neighboring gene Seven TM Receptor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in amino acid activation for nonribosomal peptide biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    AMP-dependent synthetase/ligase domain-containing protein
    NP_001255106.1
    • Confirmed by transcript evidence
    NP_001370037.1
    • Partially confirmed by transcript evidence
    NP_871636.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      11068853..11072993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001268177.2 → NP_001255106.1  AMP-dependent synthetase/ligase domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255106.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B6VQ94
      Conserved Domains (3) summary
      cd17654
      Location:4 → 430
      A_NRPS_acs4; acyl-CoA synthetase family member 4
      pfam00550
      Location:443 → 505
      PP-binding; Phosphopantetheine attachment site
      pfam13360
      Location:535 → 742
      PQQ_2; PQQ-like domain

    2. NM_001382995.1 → NP_001370037.1  AMP-dependent synthetase/ligase domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XUJ4
      Conserved Domains (3) summary
      cd17654
      Location:4 → 430
      A_NRPS_acs4; acyl-CoA synthetase family member 4
      pfam00550
      Location:443 → 505
      PP-binding; Phosphopantetheine attachment site
      pfam13360
      Location:535 → 682
      PQQ_2; PQQ-like domain

    3. NM_181907.4 → NP_871636.1  AMP-dependent synthetase/ligase domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_871636.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8I104
      Conserved Domains (3) summary
      cd17654
      Location:4 → 430
      A_NRPS_acs4; acyl-CoA synthetase family member 4
      pfam00550
      Location:443 → 505
      PP-binding; Phosphopantetheine attachment site
      pfam13360
      Location:535 → 682
      PQQ_2; PQQ-like domain
    Nucleotide Protein
    Heading Accession and Version

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