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    T19A6.1 PQ-loop repeat-containing protein 1 [ Caenorhabditis elegans ]

    Gene ID: 172623, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T19A6.1
    Official Full Name
    PQ-loop repeat-containing protein 1
    Primary source
    WormBase:WBGene00011827
    Locus tag
    CELE_T19A6.1
    See related
    AllianceGenome:WB:WBGene00011827
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in phospholipid translocation and retrograde transport, endosome to Golgi. Predicted to be located in cytosol and membrane. Predicted to be active in endosome and trans-Golgi network. Orthologous to human SLC66A2 (solute carrier family 66 member 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T19A6.1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    10
    Sequence:
    Chromosome: I; NC_003279.8 (8377407..8392758, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Tubulin alpha chain Neighboring gene Tudor domain-containing protein Neighboring gene Tubulin-specific chaperone D Neighboring gene G_PROTEIN_RECEP_F1_2 domain-containing protein Neighboring gene ncRNA Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Nucleolar GTP-binding protein 2 Neighboring gene Nuclear envelope phosphatase-regulatory subunit 1 homolog;Transmembrane protein 188

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in phospholipid translocation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in retrograde transport, endosome to Golgi IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    PQ-loop repeat-containing protein 1
    NP_001122518.1
    • Confirmed by transcript evidence
    NP_492274.3
    • Confirmed by transcript evidence
    NP_871866.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      8377407..8392758 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059873.7 → NP_492274.3  PQ-loop repeat-containing protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_492274.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EDW0
      Conserved Domains (1) summary
      pfam04193
      Location:164 → 222
      PQ-loop; PQ loop repeat

    2. NM_182066.7 → NP_871866.2  PQ-loop repeat-containing protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_871866.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EE99
      Conserved Domains (1) summary
      pfam04193
      Location:193 → 251
      PQ-loop; PQ loop repeat

    3. NM_001129046.4 → NP_001122518.1  PQ-loop repeat-containing protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122518.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EBW4
      Conserved Domains (1) summary
      pfam04193
      Location:168 → 226
      PQ-loop; PQ loop repeat
    Nucleotide Protein
    Heading Accession and Version

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