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    perm-1 Epimerase domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 174273, updated on 9-Dec-2024

    Summary

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    Official Symbol
    perm-1
    Official Full Name
    Epimerase domain-containing protein
    Primary source
    WormBase:WBGene00011350
    Locus tag
    CELE_T01H3.4
    See related
    AllianceGenome:WB:WBGene00011350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See perm-1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    6
    Sequence:
    Chromosome: II; NC_003280.10 (7880812..7882767)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene V-type proton ATPase 21 kDa proteolipid subunit c'' Neighboring gene XH domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The extra-embryonic space and the local contour are crucial geometric constraints regulating cell arrangement. Seirin-Lee S, et al. Development, 2022 May 1. PMID 35552395, Free PMC Article
    2. Hierarchical assembly of the eggshell and permeability barrier in C. elegans. Olson SK, et al. J Cell Biol, 2012 Aug 20. PMID 22908315, Free PMC Article
    3. Microtubule binding by KNL-1 contributes to spindle checkpoint silencing at the kinetochore. Espeut J, et al. J Cell Biol, 2012 Feb 20. PMID 22331849, Free PMC Article
    4. Anillin forms linear structures and facilitates furrow ingression after septin and formin depletion. Lebedev M, et al. Cell Rep, 2023 Sep 26. PMID 37665665, Free PMC Article
    5. Apical PAR protein caps orient the mitotic spindle in C. elegans early embryos. Stolpner NJ, et al. Curr Biol, 2023 Oct 23. PMID 37729910, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Epimerase domain-containing protein
    NP_495661.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      7880812..7882767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063260.8 → NP_495661.1  Epimerase domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495661.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q22090
      Conserved Domains (2) summary
      COG0451
      Location:61 → 213
      WcaG; Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]
      cl21454
      Location:116 → 213
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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