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    F47G4.5 Katanin_con80 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173270, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F47G4.5
    Official Full Name
    Katanin_con80 domain-containing protein
    Primary source
    WormBase:WBGene00009826
    Locus tag
    CELE_F47G4.5
    See related
    AllianceGenome:WB:WBGene00009826
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Contributes to microtubule severing ATPase activity. Involved in microtubule depolymerization. Part of katanin complex. Is expressed in amphid neurons; inner labial neurons; outer labial neurons; and phasmid neurons. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F47G4.5 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (14060839..14062314, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene PAN-3 domain-containing protein Neighboring gene ncRNA Neighboring gene HMG box domain-containing protein Neighboring gene WD_REPEATS_REGION domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MEI-1/MEI-2 katanin-like microtubule severing activity is required for Caenorhabditis elegans meiosis. Srayko M, et al. Genes Dev, 2000 May 1. PMID 10809666, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    contributes_to microtubule severing ATPase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule depolymerization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in microtubule depolymerization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of katanin complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of katanin complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Katanin_con80 domain-containing protein
    NP_493452.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      14060839..14062314 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_061051.5 → NP_493452.1  Katanin_con80 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_493452.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XTS3
    Nucleotide Protein
    Heading Accession and Version

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