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    snpc-1.2 SNAPc (Small Nuclear RNA Activating Complex) homolog [ Caenorhabditis elegans ]

    Gene ID: 176734, updated on 9-Dec-2024

    Summary

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    Official Symbol
    snpc-1.2
    Official Full Name
    SNAPc (Small Nuclear RNA Activating Complex) homolog
    Primary source
    WormBase:WBGene00012715
    Locus tag
    CELE_Y39E4B.2
    See related
    AllianceGenome:WB:WBGene00012715
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Orthologous to human SNAPC1 (small nuclear RNA activating complex polypeptide 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See snpc-1.2 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    7
    Sequence:
    Chromosome: III; NC_003281.10 (13165659..13169541, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ABC transporter, class E Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Major facilitator superfamily (MFS) profile domain-containing protein Neighboring gene Polypeptide N-acetylgalactosaminyltransferase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in snRNA transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in snRNA transcription by RNA polymerase III IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of snRNA-activating protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SNAPc (Small Nuclear RNA Activating Complex) homolog
    NP_499719.1
    • Product from WormBase gene class snpc;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      13165659..13169541 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067318.5 → NP_499719.1  SNAPc (Small Nuclear RNA Activating Complex) homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_499719.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U2K7
      Conserved Domains (1) summary
      pfam09808
      Location:16 → 210
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43
    Nucleotide Protein
    Heading Accession and Version

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