tceb-3 Transcription elongation factor B polypeptide 3 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: tceb-3
Official Full Name: Transcription elongation factor B polypeptide 3
Primary source: WormBase:WBGene00010990
Locus tag: CELE_R03D7.4
See related: AllianceGenome:WB:WBGene00010990
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Involved in transcription elongation by RNA polymerase II. Part of transcription elongation factor complex. Is expressed in several structures, including body wall musculature; intestine; nervous system; non-striated muscle; and pharynx. Orthologous to several human genes including ELOA2 (elongin A2) and ELOA3DP (elongin A3 family member D, pseudogene). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See tceb-3 in Genome Data Viewer

Location:: chromosome: II

Exon count:: 5

Sequence:: Chromosome: II; NC_003280.10 (10943390..10945660, complement)

Chromosome II - NC_003280.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

R03D7.4 (e-PCR)
- UniSTS:312035

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Process	Evidence Code	Pubs
involved_in transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info
involved_in transcription elongation by RNA polymerase II	IDA Inferred from Direct Assay more info	PubMed
involved_in transcription elongation by RNA polymerase II	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of elongin complex	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of transcription elongation factor complex	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: Transcription elongation factor B polypeptide 3

NP_496355.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

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Reference assembly

Genomic

NC_003280.10 Reference assembly

Range

10943390..10945660 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_063954.8 → NP_496355.1 Transcription elongation factor B polypeptide 3 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_496355.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q09413

Conserved Domains (1) summary

pfam06881
Location:237 → 338

Elongin_A; RNA polymerase II transcription factor SIII (Elongin) subunit A