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    syp-5 ING domain-containing protein;PH domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 171894, updated on 9-Dec-2024

    Summary

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    Official Symbol
    syp-5
    Official Full Name
    ING domain-containing protein;PH domain-containing protein
    Primary source
    WormBase:WBGene00021832
    Locus tag
    CELE_Y54E10A.12
    See related
    AllianceGenome:WB:WBGene00021832
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in germ line. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See syp-5 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    9
    Sequence:
    Chromosome: I; NC_003279.8 (3193528..3198838, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Ribosome production factor 2 homolog Neighboring gene E3 ubiquitin-protein ligase listerin Neighboring gene pseudo Neighboring gene DOMON domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of novel synaptonemal complex components in C. elegans. Hurlock ME, et al. J Cell Biol, 2020 May 4. PMID 32211899, Free PMC Article
    2. Sexual dimorphic regulation of recombination by the synaptonemal complex in C. elegans. Cahoon CK, et al. Elife, 2023 Oct 5. PMID 37796106, Free PMC Article
    3. Multivalent weak interactions between assembly units drive synaptonemal complex formation. Zhang Z, et al. J Cell Biol, 2020 May 4. PMID 32211900, Free PMC Article
    4. SYP-5 regulates meiotic thermotolerance in Caenorhabditis elegans. Liu Y, et al. J Mol Cell Biol, 2021 Dec 6. PMID 34081106, Free PMC Article
    5. The dynamic recruitment of LAB proteins senses meiotic chromosome axis differentiation in C. elegans. Wang R, et al. J Cell Biol, 2024 Feb 5. PMID 38010234, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SYP-5 regulates meiotic thermotolerance in Caenorhabditis elegans.
      Title: SYP-5 regulates meiotic thermotolerance in Caenorhabditis elegans.
    2. Multivalent weak interactions between assembly units drive synaptonemal complex formation.
      Title: Multivalent weak interactions between assembly units drive synaptonemal complex formation.
    3. Identification of novel synaptonemal complex components in C. elegans.
      Title: Identification of novel synaptonemal complex components in C. elegans.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    General protein information

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    Preferred Names
    ING domain-containing protein;PH domain-containing protein
    NP_001379292.1
    • Confirmed by transcript evidence
    NP_491120.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      3193528..3198838 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058719.8 → NP_491120.1  PH domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491120.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N3E8
      Conserved Domains (1) summary
      COG1196
      Location:68 → 355
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. NM_001393184.1 → NP_001379292.1  ING domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A6V7QYG0
    Nucleotide Protein
    Heading Accession and Version

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