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    F25B5.3 5'-nucleotidase;Putative cytosolic 5'-nucleotidase 3;Transposase [ Caenorhabditis elegans ]

    Gene ID: 175843, updated on 9-Dec-2024

    Summary

    Official Symbol
    F25B5.3
    Official Full Name
    5'-nucleotidase;Putative cytosolic 5'-nucleotidase 3;Transposase
    Primary source
    WormBase:WBGene00017775
    Locus tag
    CELE_F25B5.3
    See related
    AllianceGenome:WB:WBGene00017775
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable 5'-nucleotidase activity. Predicted to be involved in nucleotide metabolic process. Predicted to be active in cytoplasm. Orthologous to human NT5C3A (5'-nucleotidase, cytosolic IIIA). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See F25B5.3 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    7
    Sequence:
    Chromosome: III; NC_003281.10 (5948883..5953539)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene CDK5RAP1-like protein Neighboring gene Putative folylpolyglutamate synthase Neighboring gene NOPS domain-containing protein;RRM domain-containing protein Neighboring gene Pseudocleavage protein nop-1

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables 5'-nucleotidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables 5'-nucleotidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables XMP 5'-nucleosidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in nucleotide metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    5'-nucleotidase;Putative cytosolic 5'-nucleotidase 3;Transposase
    NP_001367732.1
    • Confirmed by transcript evidence
    NP_001367733.1
    • Confirmed by transcript evidence
    NP_498293.1
    • Confirmed by transcript evidence
    NP_498294.1
    • Confirmed by transcript evidence
    NP_741161.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      5948883..5953539
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065892.7NP_498293.1  Putative cytosolic 5'-nucleotidase 3 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498293.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q09315, Q95QJ1
      Conserved Domains (1) summary
      TIGR01544
      Location:86372
      HAD-SF-IE; haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544
    2. NM_001379733.2NP_001367733.1  Transposase [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      G8JY82
    3. NM_065893.5NP_498294.1  Putative cytosolic 5'-nucleotidase 3 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498294.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q09315
      Conserved Domains (1) summary
      TIGR01544
      Location:72358
      HAD-SF-IE; haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544
    4. NM_171141.5NP_741161.1  5'-nucleotidase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741161.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZL8
      Conserved Domains (1) summary
      TIGR01544
      Location:62348
      HAD-SF-IE; haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544
    5. NM_001379734.1NP_001367732.1  Putative cytosolic 5'-nucleotidase 3 [Caenorhabditis elegans]

      Status: REVIEWED

      Conserved Domains (1) summary
      TIGR01544
      Location:37323
      HAD-SF-IE; haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544