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    szy-5 C2H2-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 172281, updated on 9-Dec-2024

    Summary

    Official Symbol
    szy-5
    Official Full Name
    C2H2-type domain-containing protein
    Primary source
    WormBase:WBGene00016154
    Locus tag
    CELE_C27A12.2
    See related
    AllianceGenome:WB:WBGene00016154
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within with a positive effect on microtubule cytoskeleton organization. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See szy-5 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    7
    Sequence:
    Chromosome: I; NC_003279.8 (6041672..6046018)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene C2H2-type domain-containing protein Neighboring gene C2H2-type domain-containing protein Neighboring gene Homeobox protein ceh-2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-Leu

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    C2H2-type domain-containing protein
    NP_491745.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      6041672..6046018
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059344.4NP_491745.2  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491745.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O01961
      Conserved Domains (2) summary
      sd00017
      Location:431451
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:445468
      zf-H2C2_2; Zinc-finger double domain