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    F27D4.4 Zinc finger CCCH domain-containing protein 15 homolog [ Caenorhabditis elegans ]

    Gene ID: 172538, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F27D4.4
    Official Full Name
    Zinc finger CCCH domain-containing protein 15 homolog
    Primary source
    WormBase:WBGene00009189
    Locus tag
    CELE_F27D4.4
    See related
    AllianceGenome:WB:WBGene00009189
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in cytoplasmic translation. Predicted to be active in cytosol. Is expressed in hypodermis and intestine. Orthologous to human ZC3H15 (zinc finger CCCH-type containing 15). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F27D4.4 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    8
    Sequence:
    Chromosome: I; NC_003279.8 (7725019..7727112)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Vesicle transport protein Neighboring gene ncRNA Neighboring gene 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) Neighboring gene Chromate transporter

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ca(2+)/Calmodulin-binding proteins from the C. elegans proteome. Shen X, et al. Cell Calcium, 2008 May. PMID 17854888
    2. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    3. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    4. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    5. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Zinc finger CCCH domain-containing protein 15 homolog
    NP_001040656.2
    • Confirmed by transcript evidence
    NP_001040657.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      7725019..7727112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001047191.7 → NP_001040656.2  Zinc finger CCCH domain-containing protein 15 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001040656.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93618
      Conserved Domains (3) summary
      smart00356
      Location:90 → 116
      ZnF_C3H1; zinc finger
      COG5252
      Location:4 → 320
      COG5252; Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
      pfam16543
      Location:218 → 301
      DFRP_C; DRG Family Regulatory Proteins, Tma46

    2. NM_001047192.3 → NP_001040657.1  Zinc finger CCCH domain-containing protein 15 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001040657.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q1ZXT7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93618.3

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