U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    K07A12.5 MBD domain-containing protein;Pre-mRNA-splicing factor SLU7;Pre-mRNA-splicing factor SYF2 [ Caenorhabditis elegans ]

    Gene ID: 187086, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    K07A12.5
    Official Full Name
    MBD domain-containing protein;Pre-mRNA-splicing factor SLU7;Pre-mRNA-splicing factor SYF2
    Primary source
    WormBase:WBGene00010623
    Locus tag
    CELE_K07A12.5
    See related
    AllianceGenome:WB:WBGene00010623
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See K07A12.5 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    9
    Sequence:
    Chromosome: I; NC_003279.8 (8693451..8695274, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Tr-type G domain-containing protein Neighboring gene Small ribosomal subunit protein uS15m Neighboring gene putative ATP synthase subunit g 1, mitochondrial Neighboring gene Craniofacial development protein 1 Neighboring gene Proteasome subunit beta Neighboring gene TATA box-binding protein-like 1 Neighboring gene Cyclin-dependent kinase 8 Neighboring gene Collagen alpha-1(XVIII) chain;Endostatin domain-containing protein;Fibronectin type-III domain-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states. Tan D, et al. Elife, 2016 Mar 8. PMID 26952210, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    MBD domain-containing protein;Pre-mRNA-splicing factor SLU7;Pre-mRNA-splicing factor SYF2
    NP_001300398.1
    • Confirmed by transcript evidence
    NP_001300399.1
    • Confirmed by transcript evidence
    NP_001300400.1
    • Confirmed by transcript evidence
    NP_001300425.1
    • Confirmed by transcript evidence
    NP_001300426.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      8693451..8695274 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001313470.3 → NP_001300399.1  Pre-mRNA-splicing factor SYF2 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3ATL3

    2. NM_001313469.2 → NP_001300398.1  Pre-mRNA-splicing factor SYF2 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AR57

    3. NM_001313471.3 → NP_001300400.1  Pre-mRNA-splicing factor SLU7 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AQM5

    4. NM_001313496.3 → NP_001300425.1  MBD domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AQP8

    5. NM_001313497.3 → NP_001300426.1  MBD domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AU87
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools