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    Y43F8C.6 Chromatin complexes subunit BAP18;SANT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 180285, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y43F8C.6
    Official Full Name
    Chromatin complexes subunit BAP18;SANT domain-containing protein
    Primary source
    WormBase:WBGene00012828
    Locus tag
    CELE_Y43F8C.6
    See related
    AllianceGenome:WB:WBGene00012828
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be part of MLL1 complex and NURF complex. Orthologous to human C17orf49 (chromosome 17 open reading frame 49). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y43F8C.6 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_003283.11 (19633040..19640908, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Fas-binding factor 1 C-terminal domain-containing protein Neighboring gene tRNA Neighboring gene SCP domain-containing protein Neighboring gene ER membrane protein complex subunit 10 Neighboring gene ncRNA Neighboring gene Mitochondrial Ribosomal Protein, Small

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ITSN-1 controls vesicle recycling at the neuromuscular junction and functions in parallel with DAB-1. Wang W, et al. Traffic, 2008 May. PMID 18298590, Free PMC Article
    2. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    3. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of MLL1 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of NURF complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Chromatin complexes subunit BAP18;SANT domain-containing protein
    NP_001256880.1
    • Confirmed by transcript evidence
    NP_001256881.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      19633040..19640908 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269951.2 → NP_001256880.1  SANT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256880.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XWN1

    2. NM_001269952.5 → NP_001256881.1  Chromatin complexes subunit BAP18 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256881.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H8ESF1
    Nucleotide Protein
    Heading Accession and Version

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