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    C53A5.13 Fibronectin type-III domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179961, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C53A5.13
    Official Full Name
    Fibronectin type-III domain-containing protein
    Primary source
    WormBase:WBGene00008270
    Locus tag
    CELE_C53A5.13
    See related
    AllianceGenome:WB:WBGene00008270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C53A5.13 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    12
    Sequence:
    Chromosome: V; NC_003283.11 (14546869..14554856)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Calmodulin-binding domain-containing protein Neighboring gene ncRNA Neighboring gene RING-type domain-containing protein Neighboring gene Serpentine receptor class gamma-47 Neighboring gene Kelch repeat protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Fibronectin type-III domain-containing protein
    NP_001256598.1
    • Confirmed by transcript evidence
    NP_001256599.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      14546869..14554856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269669.3 → NP_001256598.1  Fibronectin type-III domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256598.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O62118
      Conserved Domains (2) summary
      pfam00041
      Location:130 → 216
      fn3; Fibronectin type III domain
      cl21522
      Location:234 → 308
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    2. NM_001269670.3 → NP_001256599.1  Fibronectin type-III domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256599.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D5MCT9
      Conserved Domains (2) summary
      pfam00041
      Location:66 → 152
      fn3; Fibronectin type III domain
      cl21522
      Location:170 → 244
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    Nucleotide Protein
    Heading Accession and Version

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