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    • Showing Current items.

    H14A12.3 Protein rogdi homolog [ Caenorhabditis elegans ]

    Gene ID: 176058, updated on 9-Dec-2024

    Summary

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    Official Symbol
    H14A12.3
    Official Full Name
    Protein rogdi homolog
    Primary source
    WormBase:WBGene00019196
    Locus tag
    CELE_H14A12.3
    See related
    AllianceGenome:WB:WBGene00019196
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in nuclear envelope. Predicted to be part of RAVE complex. Human ortholog(s) of this gene implicated in Kohlschutter-Tonz syndrome. Orthologous to human ROGDI (rogdi atypical leucine zipper). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See H14A12.3 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    4
    Sequence:
    Chromosome: III; NC_003281.10 (7463797..7465244)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene T-box transcription factor mls-1 Neighboring gene FIP (Fungus-Induced Protein) Related Neighboring gene ncRNA Neighboring gene putative fumarate hydratase, mitochondrial Neighboring gene tRNA-synt_2 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A global analysis of genetic interactions in Caenorhabditis elegans. Byrne AB, et al. J Biol, 2007. PMID 17897480, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of RAVE complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nuclear envelope IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Protein rogdi homolog
    NP_498641.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      7463797..7465244
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066240.6 → NP_498641.1  Protein rogdi homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498641.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O17213
      Conserved Domains (1) summary
      pfam10259
      Location:90 → 251
      Rogdi_lz; Rogdi leucine zipper containing protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O17213.2

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