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    lhfp-4 Lipoma HMGIC fusion partner-like 3 protein [ Caenorhabditis elegans ]

    Gene ID: 184971, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lhfp-4
    Official Full Name
    Lipoma HMGIC fusion partner-like 3 protein
    Primary source
    WormBase:WBGene00009155
    Locus tag
    CELE_F26D10.11
    See related
    AllianceGenome:WB:WBGene00009155
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in sensory perception of sound. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 67. Orthologous to several human genes including LHFPL4 (LHFPL tetraspan subfamily member 4). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lhfp-4 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    6
    Sequence:
    Chromosome: IV; NC_003282.8 (17275581..17276865)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Aamy domain-containing protein;alpha-glucosidase Neighboring gene glutamine synthetase Neighboring gene C-type lectin domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in sensory perception of sound IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Lipoma HMGIC fusion partner-like 3 protein
    NP_503066.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      17275581..17276865
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070665.3 → NP_503066.1  Lipoma HMGIC fusion partner-like 3 protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_503066.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XVU1
      Conserved Domains (1) summary
      pfam10242
      Location:19 → 183
      L_HGMIC_fpl; Lipoma HMGIC fusion partner-like protein
    Nucleotide Protein
    Heading Accession and Version

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