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    T20B3.1 Choline/carnitine acyltransferase domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 180126, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T20B3.1
    Official Full Name
    Choline/carnitine acyltransferase domain-containing protein
    Primary source
    WormBase:WBGene00011850
    Locus tag
    CELE_T20B3.1
    See related
    AllianceGenome:WB:WBGene00011850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable carnitine O-octanoyltransferase activity. Predicted to be active in peroxisome. Orthologous to human CROT (carnitine O-octanoyltransferase). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T20B3.1 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    14
    Sequence:
    Chromosome: V; NC_003283.11 (16815561..16820716)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Pseudouridine synthase I TruA alpha/beta domain-containing protein;tRNA pseudouridine synthase Neighboring gene CTP synthase Neighboring gene Cullin-associated NEDD8-dissociated protein 1 Neighboring gene Neuropeptide-Like Protein Neighboring gene Serpentine Receptor, class H Neighboring gene Serpentine Receptor, class H

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
    2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables carnitine O-octanoyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in peroxisome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Choline/carnitine acyltransferase domain-containing protein
    NP_001360572.1
    • Confirmed by transcript evidence
    NP_507245.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      16815561..16820716
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001373175.2 → NP_001360572.1  Choline/carnitine acyltransferase domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A486WVT5
      Conserved Domains (1) summary
      pfam00755
      Location:10 → 598
      Carn_acyltransf; Choline/Carnitine o-acyltransferase

    2. NM_074844.6 → NP_507245.1  Choline/carnitine acyltransferase domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_507245.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XUN8
      Conserved Domains (1) summary
      pfam00755
      Location:10 → 596
      Carn_acyltransf; Choline/Carnitine o-acyltransferase
    Nucleotide Protein
    Heading Accession and Version

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