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    rps-3A Small ribosomal subunit protein eS1 [ Caenorhabditis elegans ]

    Gene ID: 175584, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rps-3A
    Official Full Name
    Small ribosomal subunit protein eS1
    Primary source
    WormBase:WBGene00004470
    Locus tag
    CELE_F56F3.5
    See related
    AllianceGenome:WB:WBGene00004470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytosol. Orthologous to human RPS3A (ribosomal protein S3A). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See rps-3A in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003281.10 (4475918..4476876)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Translational repressor ifet-1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Insulin-like peptide 17 Neighboring gene Chondroitin proteoglycan 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Neuronal GPCR OCTR-1 regulates innate immunity by controlling protein synthesis in Caenorhabditis elegans. Liu Y, et al. Sci Rep, 2016 Nov 11. PMID 27833098, Free PMC Article
    2. An improved method for proteomics studies in C. elegans by fluorogenic derivatization, HPLC isolation, enzymatic digestion and liquid chromatography--tandem mass spectrometric identification. Masuda M, et al. Biomed Chromatogr, 2005 Sep. PMID 15654727
    3. Nucleolar proteins suppress Caenorhabditis elegans innate immunity by inhibiting p53/CEP-1. Fuhrman LE, et al. PLoS Genet, 2009 Sep. PMID 19763173, Free PMC Article
    4. RbAp46/48(LIN-53) Is Required for Holocentromere Assembly in Caenorhabditis elegans. Lee BC, et al. Cell Rep, 2016 Mar 1. PMID 26904949
    5. Galectin LEC-1 plays a defensive role against damage due to oxidative stress in Caenorhabditis elegans. Takeuchi T, et al. J Biochem, 2013 Nov. PMID 23935187

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Small ribosomal subunit protein eS1
    NP_497910.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      4475918..4476876
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065509.9 → NP_497910.1  Small ribosomal subunit protein eS1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497910.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P48154
      Conserved Domains (1) summary
      pfam01015
      Location:19 → 219
      Ribosomal_S3Ae; Ribosomal S3Ae family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P48154.2

    Gene LinkOut

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