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    C18E9.7 Fibronectin type-III domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 174432, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C18E9.7
    Official Full Name
    Fibronectin type-III domain-containing protein
    Primary source
    WormBase:WBGene00007687
    Locus tag
    CELE_C18E9.7
    See related
    AllianceGenome:WB:WBGene00007687
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and vesicoureteral reflux. Orthologous to human TNXA (tenascin XA (pseudogene)) and TNXB (tenascin XB). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C18E9.7 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    12
    Sequence:
    Chromosome: II; NC_003280.10 (8978475..8982783, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene SUZ domain-containing protein;Suppressor of zyg-1 protein 20 Neighboring gene uncharacterized protein Neighboring gene Mitochondrial import receptor subunit TOM40 homolog Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of cross-linked peptides from complex samples. Yang B, et al. Nat Methods, 2012 Sep. PMID 22772728
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Fibronectin type-III domain-containing protein
    NP_001348641.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      8978475..8982783 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001361871.2 → NP_001348641.1  Fibronectin type-III domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q18096
      Conserved Domains (2) summary
      smart00060
      Location:424 → 497
      FN3; Fibronectin type 3 domain
      cd00063
      Location:529 → 607
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    Nucleotide Protein
    Heading Accession and Version

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