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    ufbp-1 DDRGK domain-containing protein 1 [ Caenorhabditis elegans ]

    Gene ID: 176194, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ufbp-1
    Official Full Name
    DDRGK domain-containing protein 1
    Primary source
    WormBase:WBGene00022865
    Locus tag
    CELE_ZK1236.7
    See related
    AllianceGenome:WB:WBGene00022865
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ubiquitin-like protein ligase binding activity. Located in nucleus. Is expressed in head neurons. Orthologous to human DDRGK1 (DDRGK domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See ufbp-1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    5
    Sequence:
    Chromosome: III; NC_003281.10 (8439533..8443607, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Prion-like-(Q/N-rich) domain-bearing protein 96 Neighboring gene ncRNA Neighboring gene Heat shock protein 110 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The MPN domain of Caenorhabditis elegans UfSP modulates both substrate recognition and deufmylation activity. Ha BH, et al. Biochem Biophys Res Commun, 2016 Aug 5. PMID 27240952
    2. The ubiquitin-fold modifier 1 (Ufm1) cascade of Caenorhabditis elegans. Hertel P, et al. J Biol Chem, 2013 Apr 12. PMID 23449979, Free PMC Article
    3. An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans. Meissner B, et al. PLoS Genet, 2009 Jun. PMID 19557190, Free PMC Article
    4. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
    5. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables ubiquitin-like protein ligase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    DDRGK domain-containing protein 1
    NP_001254959.1
    • Confirmed by transcript evidence
    NP_001368103.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      8439533..8443607 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001268030.4 → NP_001254959.1  DDRGK domain-containing protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254959.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P34623
      Conserved Domains (1) summary
      pfam09756
      Location:129 → 316
      DDRGK; DDRGK domain

    2. NM_001379832.1 → NP_001368103.1  DDRGK domain-containing protein 1 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      H1ZUW3, P34623, Q05035
      Conserved Domains (1) summary
      pfam09756
      Location:107 → 294
      DDRGK; DDRGK domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P34623.3

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