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    Y51H7C.9 L-serine deaminase [ Caenorhabditis elegans ]

    Gene ID: 173519, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Y51H7C.9
    Official Full Name
    L-serine deaminase
    Primary source
    WormBase:WBGene00021787
    Locus tag
    CELE_Y51H7C.9
    See related
    AllianceGenome:WB:WBGene00021787
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable L-serine ammonia-lyase activity. Predicted to be involved in L-serine catabolic process. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y51H7C.9 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    11
    Sequence:
    Chromosome: II; NC_003280.10 (1409112..1411472, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Conserved oligomeric Golgi complex subunit 4 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Fe2OG dioxygenase domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables L-serine ammonia-lyase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in L-serine catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in isoleucine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    L-serine deaminase
    NP_493968.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      1409112..1411472 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_061567.5 → NP_493968.1  L-serine deaminase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_493968.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95XY8
      Conserved Domains (2) summary
      cd01562
      Location:41 → 345
      Thr-dehyd; Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly ...
      cd04886
      Location:366 → 431
      ACT_ThrD-II-like; C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains
    Nucleotide Protein
    Heading Accession and Version

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