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    Y39A3CL.4 TLDc domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175325, updated on 3-Dec-2024

    Summary

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    Official Symbol
    Y39A3CL.4
    Official Full Name
    TLDc domain-containing protein
    Primary source
    WormBase:WBGene00021442
    Locus tag
    CELE_Y39A3CL.4
    See related
    AllianceGenome:WB:WBGene00021442
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See Y39A3CL.4 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    9
    Sequence:
    Chromosome: III; NC_003281.10 (1772514..1778160, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene T-box domain-containing protein Neighboring gene ncRNA Neighboring gene C4-dicarboxylate ABC transporter Neighboring gene Variant SH3 domain protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    TLDc domain-containing protein
    NP_001040880.1
    • Confirmed by transcript evidence
    NP_001391139.1
    • Confirmed by transcript evidence
    NP_497456.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      1772514..1778160 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001404268.1 → NP_001391139.1  TLDc domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8S4QCF9, H2L0P9

    2. NM_001047415.5 → NP_001040880.1  TLDc domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001040880.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G4SRU7, H2L0P9
      Conserved Domains (1) summary
      smart00584
      Location:186 → 325
      TLDc; domain in TBC and LysM domain containing proteins

    3. NM_065055.6 → NP_497456.2  TLDc domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497456.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L0P9, Q965X3
      Conserved Domains (1) summary
      smart00584
      Location:193 → 332
      TLDc; domain in TBC and LysM domain containing proteins
    Nucleotide Protein
    Heading Accession and Version

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