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    Y54E5B.2 WD_REPEATS_REGION domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173352, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y54E5B.2
    Official Full Name
    WD_REPEATS_REGION domain-containing protein
    Primary source
    WormBase:WBGene00013204
    Locus tag
    CELE_Y54E5B.2
    See related
    AllianceGenome:WB:WBGene00013204
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable snoRNA binding activity. Predicted to be part of small-subunit processome. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y54E5B.2 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    10
    Sequence:
    Chromosome: I; NC_003279.8 (14815656..14820235, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene BLOC-1-related complex subunit 8 homolog Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Sema domain-containing protein;Semaphorin-1A Neighboring gene Mediator of RNA polymerase II transcription subunit 7 Neighboring gene Ubiquitin-conjugating enzyme E2 W

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables U3 snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables snoRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    WD_REPEATS_REGION domain-containing protein
    NP_493584.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      14815656..14820235 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_061183.6 → NP_493584.1  WD_REPEATS_REGION domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_493584.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XWF9
      Conserved Domains (2) summary
      sd00039
      Location:186 → 224
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:112 → 209
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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