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    C41D11.3 Cysteine/serine-rich nuclear protein N-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 3565087, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C41D11.3
    Official Full Name
    Cysteine/serine-rich nuclear protein N-terminal domain-containing protein
    Primary source
    WormBase:WBGene00016562
    Locus tag
    CELE_C41D11.3
    See related
    AllianceGenome:WB:WBGene00016562
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in amphid neurons; body wall musculature; pharyngeal muscle cell; and uterine muscle. Orthologous to several human genes including CSRNP3 (cysteine and serine rich nuclear protein 3). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C41D11.3 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    12
    Sequence:
    Chromosome: I; NC_003279.8 (4428457..4444348, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene DH domain-containing protein Neighboring gene Guided entry of tail-anchored proteins factor 1 Neighboring gene Uncharacterized protein Neighboring gene Eukaryotic translation initiation factor 3 subunit H Neighboring gene Endonuclease G, mitochondrial Neighboring gene TM2 domain-containing protein C41D11.9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cysteine/serine-rich nuclear protein N-terminal domain-containing protein
    NP_001293389.1
    • Confirmed by transcript evidence
    NP_001367499.1
    • Confirmed by transcript evidence
    NP_001368494.1
    • Confirmed by transcript evidence
    NP_001370421.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      4428457..4444348 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001379804.3 → NP_001367499.1  Cysteine/serine-rich nuclear protein N-terminal domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3KLZ9
      Conserved Domains (1) summary
      pfam16019
      Location:174 → 363
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus

    2. NM_001379803.2 → NP_001368494.1  Cysteine/serine-rich nuclear protein N-terminal domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A078BS72
      Conserved Domains (1) summary
      pfam16019
      Location:563 → 752
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus

    3. NM_001306460.3 → NP_001293389.1  Cysteine/serine-rich nuclear protein N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293389.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A078BPM2
      Conserved Domains (1) summary
      pfam16019
      Location:562 → 750
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus

    4. NM_001382924.1 → NP_001370421.1  Cysteine/serine-rich nuclear protein N-terminal domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYQ1
      Conserved Domains (2) summary
      pfam16019
      Location:174 → 363
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus
      NF033913
      Location:48 → 147
      fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA
    Nucleotide Protein
    Heading Accession and Version

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