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    R08F11.7 Peroxidase [ Caenorhabditis elegans ]

    Gene ID: 187708, updated on 9-Dec-2024

    Summary

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    Official Symbol
    R08F11.7
    Official Full Name
    Peroxidase
    Primary source
    WormBase:WBGene00019970
    Locus tag
    CELE_R08F11.7
    See related
    AllianceGenome:WB:WBGene00019970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable peroxidase activity. Involved in defense response to Gram-positive bacterium. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See R08F11.7 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (3790070..3793748)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Methyltransferase domain-containing protein Neighboring gene Cysteine synthase 3 Neighboring gene Glycosyl-hydrolase family 116 catalytic region domain-containing protein;Non-lysosomal glucosylceramidase Neighboring gene pseudo Neighboring gene Serpentine Receptor, class T Neighboring gene CYtochrome P450 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The SKPO-1 peroxidase functions in the hypodermis to protect Caenorhabditis elegans from bacterial infection. Tiller GR, et al. Genetics, 2014 Jun. PMID 24621828, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables peroxidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular oxidant detoxification IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in defense response to Gram-positive bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Peroxidase
    NP_504048.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      3790070..3793748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071647.5 → NP_504048.1  Peroxidase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504048.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O01892
      Conserved Domains (2) summary
      cd09823
      Location:359 → 740
      peroxinectin_like; peroxinectin_like animal heme peroxidases
      pfam03098
      Location:207 → 745
      An_peroxidase; Animal haem peroxidase
    Nucleotide Protein
    Heading Accession and Version

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