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    • Showing Current items.

    C54G4.4 Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [ Caenorhabditis elegans ]

    Gene ID: 172579, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C54G4.4
    Official Full Name
    Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1
    Primary source
    WormBase:WBGene00008314
    Locus tag
    CELE_C54G4.4
    See related
    AllianceGenome:WB:WBGene00008314
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in extracellular region and plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C54G4.4 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    11
    Sequence:
    Chromosome: I; NC_003279.8 (7996659..8003179, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene RING-type domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Transmembrane protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Methyl-accepting chemotaxis protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1
    NP_492201.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      7996659..8003179 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059800.5 → NP_492201.1  Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_492201.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q18849
      Conserved Domains (2) summary
      cd00033
      Location:161 → 217
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
      smart00034
      Location:355 → 473
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    Nucleotide Protein
    Heading Accession and Version

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