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    • Showing Current items.

    clec-55 C-type LECtin [ Caenorhabditis elegans ]

    Gene ID: 184218, updated on 28-Oct-2024

    Summary

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    Official Symbol
    clec-55
    Official Full Name
    C-type LECtin
    Primary source
    WormBase:WBGene00008597
    Locus tag
    CELE_F08H9.9
    See related
    AllianceGenome:WB:WBGene00008597
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See clec-55 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_003283.11 (14479279..14482317)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene C-type LECtin Neighboring gene CUB domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Protein ORF59 Neighboring gene Ground-like domain-containing protein Neighboring gene Ovule protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Determining Toxic Potencies of Water-Soluble Contaminants in Wastewater Influents and Effluent Using Gene Expression Profiling in C. elegans as a Bioanalytical Tool. Karengera A, et al. Arch Environ Contam Toxicol, 2022 Oct. PMID 36190544, Free PMC Article
    2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    C-type LECtin
    NP_506591.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      14479279..14482317
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_074190.3 → NP_506591.1  C-type LECtin [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506591.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EDN7
      Conserved Domains (3) summary
      smart00034
      Location:26 → 148
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      smart00042
      Location:280 → 378
      CUB; Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein
      cd00041
      Location:166 → 266
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    Nucleotide Protein
    Heading Accession and Version

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