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    cyts-1 Tryptophan synthase beta chain-like PALP domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 184055, updated on 9-Dec-2024

    Summary

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    Official Symbol
    cyts-1
    Official Full Name
    Tryptophan synthase beta chain-like PALP domain-containing protein
    Primary source
    WormBase:WBGene00008490
    Locus tag
    CELE_F01D4.8
    See related
    AllianceGenome:WB:WBGene00008490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in cysteine biosynthetic process. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See cyts-1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    5
    Sequence:
    Chromosome: IV; NC_003282.8 (10450733..10453101, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Neprosin domain-containing protein Neighboring gene Putative pyridoxal-phosphate dependent protein F13B12.4 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Serpentine receptor class beta-17

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in cysteine biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in cysteine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Tryptophan synthase beta chain-like PALP domain-containing protein
    NP_501929.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      10450733..10453101 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069528.4 → NP_501929.1  Tryptophan synthase beta chain-like PALP domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501929.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EF21
      Conserved Domains (1) summary
      cl00342
      Location:57 → 384
      Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...
    Nucleotide Protein
    Heading Accession and Version

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