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    abts-2 Bicarbonate transporter-like transmembrane domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 186108, updated on 9-Dec-2024

    Summary

    Official Symbol
    abts-2
    Official Full Name
    Bicarbonate transporter-like transmembrane domain-containing protein
    Primary source
    WormBase:WBGene00009929
    Locus tag
    CELE_F52D10.1
    See related
    AllianceGenome:WB:WBGene00009929
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be involved in monoatomic ion homeostasis and transmembrane transport. Located in basolateral plasma membrane. Is expressed in excretory cell; gonadal sheath cell; intestine; rectal gland cell; and tail neurons. Human ortholog(s) of this gene implicated in Fuchs' endothelial dystrophy; congenital hereditary endothelial dystrophy of cornea; and corneal dystrophy-perceptive deafness syndrome. Orthologous to human SLC4A11 (solute carrier family 4 member 11). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See abts-2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    18
    Sequence:
    Chromosome: X; NC_003284.9 (11585675..11589717)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene FERM domain-containing protein;FYVE, RhoGEF and PH domain-containing protein 6;Moesin/ezrin/radixin homolog 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene PID domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables solute:inorganic anion antiporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in inorganic anion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in monoatomic anion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in monoatomic ion homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in basolateral plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in basolateral plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Bicarbonate transporter-like transmembrane domain-containing protein
    NP_509936.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      11585675..11589717
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_077535.8NP_509936.3  Bicarbonate transporter-like transmembrane domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_509936.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EGB9
      Conserved Domains (2) summary
      cl00163
      Location:111190
      PTS_IIA_fru; PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This ...
      cl23746
      Location:229683
      HCO3_cotransp; HCO3- transporter family