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    zip-5 BZIP domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 183204, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zip-5
    Official Full Name
    BZIP domain-containing protein
    Primary source
    WormBase:WBGene00007932
    Locus tag
    CELE_C34D1.5
    See related
    AllianceGenome:WB:WBGene00007932
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in head muscle; head neurons; intestine; tail neurons; and ventral nerve cord. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See zip-5 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (13264545..13269827)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Guanine nucleotide-binding protein alpha-17 subunit Neighboring gene Alpha/beta hydrolase Neighboring gene ncRNA Neighboring gene PH domain-containing protein;Protein vav Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pathogenic bacteria modulate pheromone response to promote mating. Wu T, et al. Nature, 2023 Jan. PMID 36599989, Free PMC Article
    2. Two C. elegans DM domain proteins, DMD-3 and MAB-3, function in late stages of male somatic gonad development. Smith M, et al. Dev Biol, 2024 Oct. PMID 38880276
    3. Co-regulation by Notch and Fos is required for cell fate specification of intermediate precursors during C. elegans uterine development. Oommen KS, et al. Development, 2007 Nov. PMID 17942488
    4. High-throughput behavioral analysis in C. elegans. Swierczek NA, et al. Nat Methods, 2011 Jun 5. PMID 21642964, Free PMC Article
    5. Networks of bZIP protein-protein interactions diversified over a billion years of evolution. Reinke AW, et al. Science, 2013 May 10. PMID 23661758, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    BZIP domain-containing protein
    NP_001122873.1
    • Confirmed by transcript evidence
    NP_001122874.1
    • Partially confirmed by transcript evidence
    NP_506292.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      13264545..13269827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001129401.4 → NP_001122873.1  BZIP domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122873.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EG34
      Conserved Domains (2) summary
      cd14686
      Location:101 → 151
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
      TIGR02168
      Location:83 → 194
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_073891.3 → NP_506292.1  BZIP domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506292.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EBE5
      Conserved Domains (2) summary
      cd14686
      Location:112 → 162
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
      TIGR02168
      Location:101 → 205
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    3. NM_001129402.1 → NP_001122874.1  BZIP domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122874.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B1V8I9
    Nucleotide Protein
    Heading Accession and Version

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