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    trpp-11 Foie-gras_1 domain-containing protein;TRAPP II complex TRAPPC10 C-terminal domain-containing protein;Trafficking protein particle complex subunit 11 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175236, updated on 2-Nov-2024

    Summary

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    Official Symbol
    trpp-11
    Official Full Name
    Foie-gras_1 domain-containing protein;TRAPP II complex TRAPPC10 C-terminal domain-containing protein;Trafficking protein particle complex subunit 11 domain-containing protein
    Primary source
    WormBase:WBGene00015173
    Locus tag
    CELE_B0412.3
    See related
    AllianceGenome:WB:WBGene00015173
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2S. Orthologous to human TRAPPC11 (trafficking protein particle complex subunit 11). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See trpp-11 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    17
    Sequence:
    Chromosome: III; NC_003281.10 (795136..809437)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Small ribosomal subunit protein uS14 Neighboring gene ncRNA Neighboring gene Dauer larva development regulatory growth factor daf-7 Neighboring gene Dachshund homolog dac-1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of genes that protect the C. elegans genome against mutations by genome-wide RNAi. Pothof J, et al. Genes Dev, 2003 Feb 15. PMID 12600937, Free PMC Article
    2. An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans. Meissner B, et al. PLoS Genet, 2009 Jun. PMID 19557190, Free PMC Article
    3. Identification and characterization of novel nicotinic receptor-associated proteins in Caenorhabditis elegans. Gottschalk A, et al. EMBO J, 2005 Jul 20. PMID 15990870, Free PMC Article
    4. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
    5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Foie-gras_1 domain-containing protein;TRAPP II complex TRAPPC10 C-terminal domain-containing protein;Trafficking protein particle complex subunit 11 domain-containing protein
    NP_001309583.1
    • Confirmed by transcript evidence
    NP_001309584.1
    • Confirmed by transcript evidence
    NP_001309586.1
    • Confirmed by transcript evidence
    NP_001368591.1
    • Confirmed by transcript evidence
    NP_497264.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      795136..809437
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001322633.2 → NP_001309583.1  Trafficking protein particle complex subunit 11 domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A131MD37
      Conserved Domains (2) summary
      pfam11817
      Location:260 → 513
      Foie-gras_1; Foie gras liver health family 1
      pfam12584
      Location:973 → 1058
      TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10

    2. NM_064863.7 → NP_497264.2  Trafficking protein particle complex subunit 11 domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A131MBH5
      Conserved Domains (2) summary
      pfam11817
      Location:1 → 242
      Foie-gras_1; Foie gras liver health family 1
      pfam12584
      Location:702 → 787
      TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10

    3. NM_001322637.3 → NP_001309584.1  TRAPP II complex TRAPPC10 C-terminal domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A131MBP2
      Conserved Domains (1) summary
      pfam12584
      Location:166 → 251
      TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10

    4. NM_001381714.1 → NP_001368591.1  TRAPP II complex TRAPPC10 C-terminal domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A131MCR0
      Conserved Domains (1) summary
      pfam12584
      Location:3 → 41
      TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10

    5. NM_001322646.4 → NP_001309586.1  Foie-gras_1 domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A131MCW2
      Conserved Domains (1) summary
      pfam12584
      Location:5 → 32
      TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10
    Nucleotide Protein
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