U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    tag-241 Girdin [ Caenorhabditis elegans ]

    Gene ID: 181360, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    tag-241
    Official Full Name
    Girdin
    Primary source
    WormBase:WBGene00044079
    Locus tag
    CELE_C34E11.3
    See related
    AllianceGenome:WB:WBGene00044079
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to several human genes including MTCL1 (microtubule crosslinking factor 1) and MTCL2 (microtubule crosslinking factor 2). [provided by Alliance of Genome Resources, Nov 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See tag-241 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    29
    Sequence:
    Chromosome: X; NC_003284.9 (11824004..11836162)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene TAFII55 protein conserved region domain-containing protein Neighboring gene ZP domain-containing protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
    2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    4. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    Girdin
    NP_001257174.1
    • Confirmed by transcript evidence
    NP_001355535.1
    • Confirmed by transcript evidence
    NP_001355536.1
    • Confirmed by transcript evidence
    NP_001355537.1
    • Confirmed by transcript evidence
    NP_001367232.1
    • Partially confirmed by transcript evidence
    NP_001379512.1
    • Confirmed by transcript evidence
    NP_001379513.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      11824004..11836162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001270245.2 → NP_001257174.1  Girdin [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001257174.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EGR4
      Conserved Domains (1) summary
      TIGR02168
      Location:326 → 1247
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_001392852.1 → NP_001379512.1  Girdin [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      D3KFS9

    3. NM_001368527.5 → NP_001355535.1  Girdin [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A3P6PCW4
      Conserved Domains (2) summary
      COG1196
      Location:119 → 465
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:339 → 1260
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    4. NM_001368528.3 → NP_001355536.1  Girdin [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A3P6N684
      Conserved Domains (2) summary
      COG1196
      Location:119 → 440
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:339 → 1260
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    5. NM_001368529.3 → NP_001355537.1  Girdin [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A3P6NIF2
      Conserved Domains (2) summary
      COG1196
      Location:119 → 440
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:339 → 1260
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    6. NM_001392853.1 → NP_001379513.1  Girdin [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      D3KFT0

    7. NM_001381110.1 → NP_001367232.1  Girdin [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5ED16
      Conserved Domains (2) summary
      COG1196
      Location:106 → 427
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:326 → 1247
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools