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    F26F2.7 Protein TAPT1 homolog [ Caenorhabditis elegans ]

    Gene ID: 180347, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F26F2.7
    Official Full Name
    Protein TAPT1 homolog
    Primary source
    WormBase:WBGene00009172
    Locus tag
    CELE_F26F2.7
    See related
    AllianceGenome:WB:WBGene00009172
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in positive regulation of cilium assembly. Predicted to be located in membrane. Predicted to be active in ciliary basal body and endoplasmic reticulum membrane. Orthologous to human TAPT1 (transmembrane anterior posterior transformation 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F26F2.7 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    15
    Sequence:
    Chromosome: V; NC_003283.11 (20580990..20590339)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene PAN-3 domain-containing protein Neighboring gene Protein quiver Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene C6 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in positive regulation of cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in ciliary basal body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Protein TAPT1 homolog
    NP_001355520.1
    • Confirmed by transcript evidence
    NP_001355522.1
    • Confirmed by transcript evidence
    NP_001370996.1
    • Confirmed by transcript evidence
    NP_507972.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      20580990..20590339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001368486.2 → NP_001355520.1  Protein TAPT1 homolog [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A3P6MY96
      Conserved Domains (1) summary
      pfam05346
      Location:223 → 528
      DUF747; Eukaryotic membrane protein family

    2. NM_075571.6 → NP_507972.1  Protein TAPT1 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_507972.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9U3H8
      Conserved Domains (1) summary
      pfam05346
      Location:221 → 526
      DUF747; Eukaryotic membrane protein family

    3. NM_001383511.2 → NP_001370996.1  Protein TAPT1 homolog [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A3P6NNU2
      Conserved Domains (1) summary
      pfam05346
      Location:13 → 318
      DUF747; Eukaryotic membrane protein family

    4. NM_001368488.5 → NP_001355522.1  Protein TAPT1 homolog [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A3P6P9A6
      Conserved Domains (1) summary
      pfam05346
      Location:1 → 182
      DUF747; Eukaryotic membrane protein family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9U3H8.1

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