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    • Showing Current items.

    set-31 SET domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179939, updated on 2-Nov-2024

    Summary

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    Official Symbol
    set-31
    Official Full Name
    SET domain-containing protein
    Primary source
    WormBase:WBGene00007615
    Locus tag
    CELE_C15H11.5
    See related
    AllianceGenome:WB:WBGene00007615
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in chromosome, centromeric region. Is expressed in germ line and hypodermis. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See set-31 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    9
    Sequence:
    Chromosome: V; NC_003283.11 (14417903..14420144)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Nuclear RNA export factor 1 Neighboring gene Cytochrome b-c1 complex subunit 10;Essential MCU regulator, mitochondrial Neighboring gene Nuclear RNA export factor 2 Neighboring gene DeHydrogenases, Short chain Neighboring gene Proteasome subunit alpha type-6 Neighboring gene DNA-directed RNA polymerase subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two C. elegans histone methyltransferases repress lin-3 EGF transcription to inhibit vulval development. Andersen EC, et al. Development, 2007 Aug. PMID 17634190
    2. Epigenetics in C. elegans: facts and challenges. Wenzel D, et al. Genesis, 2011 Aug. PMID 21538806
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    SET domain-containing protein
    NP_506569.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      14417903..14420144
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_074168.7 → NP_506569.1  SET domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506569.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O17585
      Conserved Domains (2) summary
      smart00298
      Location:44 → 90
      CHROMO; Chromatin organization modifier domain
      smart00317
      Location:299 → 425
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    Nucleotide Protein
    Heading Accession and Version

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