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    Y56A3A.22 DUF1279 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 176627, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y56A3A.22
    Official Full Name
    DUF1279 domain-containing protein
    Primary source
    WormBase:WBGene00013239
    Locus tag
    CELE_Y56A3A.22
    See related
    AllianceGenome:WB:WBGene00013239
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Predicted to be active in mitochondrion. Is expressed in germ line; gonad; hypodermis; intestine; and muscle cell. Orthologous to human FAM210A (family with sequence similarity 210 member A). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y56A3A.22 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003281.10 (11921692..11923825)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex subunit 7 Neighboring gene Translocon-associated protein subunit delta Neighboring gene Nitrilase homolog Neighboring gene dolichol kinase Neighboring gene Homeobox protein cut-like Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Caenorhabditis elegans homologue of Fam210 is required for oogenesis and reproduction. Kang J, et al. J Genet Genomics, 2020 Nov 20. PMID 33547005
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Caenorhabditis elegans homologue of Fam210 is required for oogenesis and reproduction.
      Title: Caenorhabditis elegans homologue of Fam210 is required for oogenesis and reproduction.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DUF1279 domain-containing protein
    NP_499555.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      11921692..11923825
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067154.9 → NP_499555.1  DUF1279 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_499555.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U236, Q9U237
      Conserved Domains (1) summary
      pfam06916
      Location:82 → 170
      DUF1279; Protein of unknown function (DUF1279)
    Nucleotide Protein
    Heading Accession and Version

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