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    Y56A3A.31 SOSS complex subunit A homolog [ Caenorhabditis elegans ]

    Gene ID: 190330, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y56A3A.31
    Official Full Name
    SOSS complex subunit A homolog
    Primary source
    WormBase:WBGene00013243
    Locus tag
    CELE_Y56A3A.31
    See related
    AllianceGenome:WB:WBGene00013243
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human INTS15 (integrator complex subunit 15). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y56A3A.31 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    6
    Sequence:
    Chromosome: III; NC_003281.10 (11974477..11989930)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene C2H2-type domain-containing protein Neighboring gene Uracil-DNA glycosylase Neighboring gene SP-RING-type domain-containing protein Neighboring gene Pyr_redox_2 domain-containing protein Neighboring gene Exonuclease domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of integrator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SOSS complex subunit A homolog
    NP_001317884.1
    • Confirmed by transcript evidence
    NP_001366956.1
    • Confirmed by transcript evidence
    NP_001368604.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      11974477..11989930
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001379942.2 → NP_001366956.1  SOSS complex subunit A homolog [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U230
      Conserved Domains (1) summary
      pfam14964
      Location:103 → 233
      DUF4507; Domain of unknown function (DUF4507)

    2. NM_001379941.1 → NP_001368604.1  SOSS complex subunit A homolog [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1C3NSQ4
      Conserved Domains (1) summary
      pfam14964
      Location:114 → 244
      DUF4507; Domain of unknown function (DUF4507)

    3. NM_001330972.3 → NP_001317884.1  SOSS complex subunit A homolog [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1C3NSJ2
    Nucleotide Protein
    Heading Accession and Version

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