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    lpr-3 LiPocalin-Related protein [ Caenorhabditis elegans ]

    Gene ID: 181295, updated on 2-Nov-2024

    Summary

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    Official Symbol
    lpr-3
    Official Full Name
    LiPocalin-Related protein
    Primary source
    WormBase:WBGene00012261
    Locus tag
    CELE_W04G3.8
    See related
    AllianceGenome:WB:WBGene00012261
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in lipid transport. Predicted to be located in extracellular region. Is expressed in excretory system; hypodermis; intestine; and vulva. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See lpr-3 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    7
    Sequence:
    Chromosome: X; NC_003284.9 (11057401..11059793)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Glycosyltransferase 2-like domain-containing protein Neighboring gene ncRNA Neighboring gene LiPocalin-Related protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Caenorhabditis elegans Patched domain protein PTR-4 is required for proper organization of the precuticular apical extracellular matrix. Cohen JD, et al. Genetics, 2021 Nov 5. PMID 34740248, Free PMC Article
    2. Lipocalins Are Required for Apical Extracellular Matrix Organization and Remodeling in Caenorhabditis elegans. Forman-Rubinsky R, et al. Genetics, 2017 Oct. PMID 28842397, Free PMC Article
    3. Lipocalin signaling controls unicellular tube development in the Caenorhabditis elegans excretory system. Stone CE, et al. Dev Biol, 2009 May 15. PMID 19269285, Free PMC Article
    4. C. elegans BLMP-1 controls apical epidermal cell morphology by repressing expression of mannosyltransferase bus-8 and molting signal mlt-8. Wu YZ, et al. Dev Biol, 2022 Jun. PMID 35367457
    5. Gene regulatory network inference in long-lived C. elegans reveals modular properties that are predictive of novel aging genes. Suriyalaksh M, et al. iScience, 2022 Jan 21. PMID 35036864, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LPR-3 is required for apical extracellular matrix organization, clearance and remodeling.
      Title: Lipocalins Are Required for Apical Extracellular Matrix Organization and Remodeling in Caenorhabditis elegans.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in lipid transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LiPocalin-Related protein
    NP_509849.1
    • Product from WormBase gene class lpr;
      Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      11057401..11059793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_077448.6 → NP_509849.1  LiPocalin-Related protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_509849.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EEA2
    Nucleotide Protein
    Heading Accession and Version

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