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    clec-85 C-type lectin domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 177068, updated on 9-Dec-2024

    Summary

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    Official Symbol
    clec-85
    Official Full Name
    C-type lectin domain-containing protein
    Primary source
    WormBase:WBGene00021872
    Locus tag
    CELE_Y54G2A.6
    See related
    AllianceGenome:WB:WBGene00021872
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in intestine. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See clec-85 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    5
    Sequence:
    Chromosome: IV; NC_003282.8 (2850886..2855456)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene C-type lectin domain-containing protein Neighboring gene C-type lectin domain-containing protein Neighboring gene SCP domain-containing protein Neighboring gene ncRNA Neighboring gene C-type lectin domain-containing protein Neighboring gene RING-type domain-containing protein Neighboring gene BLVR domain-containing protein Neighboring gene Inner membrane protein;Transmembrane protein Neighboring gene Nicotinate phosphoribosyltransferase Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Investigation into in vitro and in vivo models using intestinal epithelial IPEC-J2 cells and Caenorhabditis elegans for selecting probiotic candidates to control porcine enterotoxigenic Escherichia coli. Zhou M, et al. J Appl Microbiol, 2014 Jul. PMID 24674595
    2. Characterizing the type 6 secretion system (T6SS) of E. cloacae SBP-8 and its role in pathogenesis and bacterial competition. Khan S, et al. Microb Pathog, 2023 Oct. PMID 37536636
    3. Long-term and low-dose exposure to nanopolystyrene induces a protective strategy to maintain functional state of intestine barrier in nematode Caenorhabditis elegans. Shao H, et al. Environ Pollut, 2020 Mar. PMID 31767235
    4. Elucidating the pathogenic potential of Enterobacter cloacae SBP-8 using Caenorhabditis elegans as a model host. Khan S, et al. Microb Pathog, 2020 Nov. PMID 32798671
    5. Cell Signaling of Caenorhabditis elegans in Response to Enterotoxigenic Escherichia coli Infection and Lactobacillus zeae Protection. Zhou M, et al. Front Immunol, 2018. PMID 30250464, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    C-type lectin domain-containing protein
    NP_001368197.1
    • Confirmed by transcript evidence
    NP_001370868.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      2850886..2855456
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001383060.2 → NP_001370868.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95XX2
      Conserved Domains (2) summary
      PRK12799
      Location:155 → 280
      motB; flagellar motor protein MotB; Reviewed
      smart00034
      Location:21 → 138
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    2. NM_001380115.1 → NP_001368197.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PAM5
      Conserved Domains (1) summary
      PRK12799
      Location:56 → 181
      motB; flagellar motor protein MotB; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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