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    bed-3 Zinc finger BED domain-containing protein 3 [ Caenorhabditis elegans ]

    Gene ID: 184940, updated on 2-Nov-2024

    Summary

    Official Symbol
    bed-3
    Official Full Name
    Zinc finger BED domain-containing protein 3
    Primary source
    WormBase:WBGene00009133
    Locus tag
    CELE_F25H8.6
    See related
    AllianceGenome:WB:WBGene00009133
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in molting cycle; regulation of cell division; and vulval cell fate specification. Predicted to be active in nucleus. Is expressed in M lineage cell; hypodermis; and vulva. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See bed-3 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    8
    Sequence:
    Chromosome: IV; NC_003282.8 (9916524..9921967)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Dauer Up-Regulated Neighboring gene tRNA methyltransferase 10 homolog A Neighboring gene H/ACA ribonucleoprotein complex non-core subunit NAF1

    Bibliography

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Zinc finger BED domain-containing protein 3
    NP_501785.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      9916524..9921967
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069384.6NP_501785.1  Zinc finger BED domain-containing protein 3 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501785.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q19787
      Conserved Domains (1) summary
      pfam02892
      Location:126169
      zf-BED; BED zinc finger