Y25C1A.8 Zinc finger Ran-binding domain-containing protein 2 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: Y25C1A.8
Official Full Name: Zinc finger Ran-binding domain-containing protein 2
Primary source: WormBase:WBGene00021295
Locus tag: CELE_Y25C1A.8
See related: AllianceGenome:WB:WBGene00021295
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable lipopolysaccharide binding activity. Predicted to be involved in RNA processing. Predicted to be located in nucleus. Orthologous to human ZRANB2 (zinc finger RANBP2-type containing 2). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See Y25C1A.8 in Genome Data Viewer

Location:: chromosome: II

Exon count:: 6

Sequence:: Chromosome: II; NC_003280.10 (3071173..3076959, complement)

Chromosome II - NC_003280.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

Y25C1A.8 (e-PCR)
- UniSTS:322382

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables lipopolysaccharide binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in RNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Zinc finger Ran-binding domain-containing protein 2

NP_494440.1

Confirmed by transcript evidence

NP_871988.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003280.10 Reference assembly

Range

3071173..3076959 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_182188.6 → NP_871988.1 Zinc finger Ran-binding domain-containing protein 2 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_871988.1

Status: REVIEWED

UniProtKB/TrEMBL

Q8ITV3
NM_062039.6 → NP_494440.1 Zinc finger Ran-binding domain-containing protein 2 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_494440.1

Status: REVIEWED

UniProtKB/TrEMBL

H2KYA0

Conserved Domains (2) summary

smart00547
Location:72 → 96

ZnF_RBZ; Zinc finger domain

sd00025
Location:21 → 42

zf-RanBP2; RanBP2-type Zn finger [structural motif]