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    ceh-17 Homeobox protein ceh-17 [ Caenorhabditis elegans ]

    Gene ID: 172059, updated on 9-Dec-2024

    Summary

    Official Symbol
    ceh-17
    Official Full Name
    Homeobox protein ceh-17
    Primary source
    WormBase:WBGene00000440
    Locus tag
    CELE_D1007.1
    See related
    AllianceGenome:WB:WBGene00000440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Enables DNA-binding transcription activator activity, RNA polymerase II-specific. Involved in axon guidance; positive regulation of transcription by RNA polymerase II; and regulation of axon extension. Located in nucleus. Is expressed in DA8; head muscle; head neurons; and somatic nervous system. Human ortholog(s) of this gene implicated in colorectal cancer; congenital central hypoventilation syndrome; congenital fibrosis of the extraocular muscles 2; and neuroblastoma. Orthologous to several human genes including PHOX2A (paired like homeobox 2A). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See ceh-17 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    3
    Sequence:
    Chromosome: I; NC_003279.8 (4568765..4570027, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Prion-like-(Q/N-rich)-domain-bearing protein Neighboring gene Intrinsically Disordered Protein, expressed in Pharynx Neighboring gene Collagen triple helix repeat protein Neighboring gene Uncharacterized protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in axon guidance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in neuron development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of axon extension IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Homeobox protein ceh-17
    NP_491393.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      4568765..4570027 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058992.6NP_491393.1  Homeobox protein ceh-17 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491393.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      G5EC89
      Conserved Domains (2) summary
      pfam00046
      Location:153206
      Homeobox; Homeobox domain
      pfam12413
      Location:20112
      DLL_N; Homeobox protein distal-less-like N terminal